Archive for the ‘CellML Workshop 2009’ Category

Mosaic of biological standards and domain-specific languages

One of the positive outcomes from the CellML et al. workshop was community consensus towards a possibility of well woven interoperability and connectivity of biological standards , ontologies and domain specific languages. In last few years we have seen various [...]


Open Flow Biological Network Initiative

One of the my favorite talks at CellML et al workshop 2009 by Hiroaki Kitano, and the real mantra behind the talk is Web 2.0 and its impact on community curation and collaborated biological modelling. Community-annotation efforts such as Wikiprofessional, [...]


Physiome Model Repository 2 (PMR2)

PMR is Physiome Model Repository and has currently close to 400 CellML models. Current PMR software is a Plone product designed to facilitate model upload, annotation, version control, storage, and download. It allows information about models to be viewed and [...]


Welcome and Introduction to CellML

CellML is designed to support the definition and sharing of the models of biological process. It is intended to provide the consistency in mathematical representation. CellML encourages model evolution and reuse. It also provides a representation in a form (XML) [...]